STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DV20_27860HicB family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (171 aa)    
Predicted Functional Partners:
DV20_27865
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.964
DV20_33135
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.743
thyX
FAD-dependent thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant.
       0.627
DV20_27850
Amino acid-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.593
DV20_40445
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.572
DV20_17165
Phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.520
DV20_26665
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.501
DV20_41685
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.476
DV20_33800
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.468
DV20_26025
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.452
Your Current Organism:
Amycolatopsis rifamycinica
NCBI taxonomy Id: 287986
Other names: A. rifamycinica, ATCC 27643, Amycolatopsis rifamycinica Bala et al. 2004, DSM 46095, JCM 12674, strain NT 19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.