STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DV20_32185Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (390 aa)    
Predicted Functional Partners:
DV20_19480
Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 18 family.
  
     0.673
DV20_18145
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.650
DV20_30005
Xyloglucanase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.614
DV20_39645
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.609
DV20_30050
Chitin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.580
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
  0.573
DV20_43420
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.570
DV20_17540
Cellulose-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.561
DV20_11525
Endoglucanase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.530
DV20_43425
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.529
Your Current Organism:
Amycolatopsis rifamycinica
NCBI taxonomy Id: 287986
Other names: A. rifamycinica, ATCC 27643, Amycolatopsis rifamycinica Bala et al. 2004, DSM 46095, JCM 12674, strain NT 19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.