STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DV20_33330Patatin; Derived by automated computational analysis using gene prediction method: Protein Homology. (346 aa)    
Predicted Functional Partners:
DV20_33325
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.763
DV20_31315
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.692
DV20_05290
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.680
DV20_02320
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.651
DV20_41395
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.650
DV20_40025
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.640
DV20_40255
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.632
DV20_01775
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.616
DV20_31850
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.616
DV20_24840
Glycerophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.596
Your Current Organism:
Amycolatopsis rifamycinica
NCBI taxonomy Id: 287986
Other names: A. rifamycinica, ATCC 27643, Amycolatopsis rifamycinica Bala et al. 2004, DSM 46095, JCM 12674, strain NT 19
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