IGPS protein (Ectocarpus siliculosus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

IGPS

Indole-3-glycerol-phosphate synthase. (313 aa)

Predicted Functional Partners:

Esi_0003_0266

0.999

PABS

0.999

AS

0.999

IGPS-2

0.999

Esi_0281_0043

0.999

Esi_0281_0044

0.999

Esi_0036_0051

0.999

ICS

0.999

Esi_0060_0108

0.999

IGPS-3

0.983

Your Current Organism:

Ectocarpus siliculosus

NCBI taxonomy Id: 2880
Other names: E. siliculosus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AS	Esi_0003_0266	D7FYK6	D7FW59	Anthranilate Synthase.	Anthranilate Phosphoribosyltransferase.	0.998
AS	Esi_0036_0051	D7FYK6	D8LLB1	Anthranilate Synthase.	Tryptophan synthase (Alpha / beta chains).	0.958
AS	Esi_0060_0108	D7FYK6	D8LQU8	Anthranilate Synthase.	Tryptophan synthase (Alpha / beta chains).	0.958
AS	Esi_0281_0043	D7FYK6	D8LK76	Anthranilate Synthase.	Bifunctional Indole-3-Glycerol Phosphate Synthase/Phosphoribosylanthranilate Isomerase (C-terminal).	0.999
AS	Esi_0281_0044	D7FYK6	D8LK77	Anthranilate Synthase.	Bifunctional Indole-3-Glycerol Phosphate Synthase/Phosphoribosylanthranilate Isomerase (N-terminal).	0.999
AS	ICS	D7FYK6	D8LMF2	Anthranilate Synthase.	Similar to Isochorismate Synthase.	0.623
AS	IGPS	D7FYK6	D7FHD7	Anthranilate Synthase.	Indole-3-glycerol-phosphate synthase.	0.999
AS	IGPS-2	D7FYK6	D7G2M9	Anthranilate Synthase.	annotation not available	0.999
AS	IGPS-3	D7FYK6	D8LBG8	Anthranilate Synthase.	Indole-3-glycerol-phosphate synthase.	0.936
AS	PABS	D7FYK6	D7FWN2	Anthranilate Synthase.	p-Aminobenzoate Synthase (C-terminal region) p-Aminobenzoate Synthase (N-terminal region).	0.665
Esi_0003_0266	AS	D7FW59	D7FYK6	Anthranilate Phosphoribosyltransferase.	Anthranilate Synthase.	0.998
Esi_0003_0266	Esi_0036_0051	D7FW59	D8LLB1	Anthranilate Phosphoribosyltransferase.	Tryptophan synthase (Alpha / beta chains).	0.997
Esi_0003_0266	Esi_0060_0108	D7FW59	D8LQU8	Anthranilate Phosphoribosyltransferase.	Tryptophan synthase (Alpha / beta chains).	0.997
Esi_0003_0266	Esi_0281_0043	D7FW59	D8LK76	Anthranilate Phosphoribosyltransferase.	Bifunctional Indole-3-Glycerol Phosphate Synthase/Phosphoribosylanthranilate Isomerase (C-terminal).	0.999
Esi_0003_0266	Esi_0281_0044	D7FW59	D8LK77	Anthranilate Phosphoribosyltransferase.	Bifunctional Indole-3-Glycerol Phosphate Synthase/Phosphoribosylanthranilate Isomerase (N-terminal).	0.999
Esi_0003_0266	ICS	D7FW59	D8LMF2	Anthranilate Phosphoribosyltransferase.	Similar to Isochorismate Synthase.	0.995
Esi_0003_0266	IGPS	D7FW59	D7FHD7	Anthranilate Phosphoribosyltransferase.	Indole-3-glycerol-phosphate synthase.	0.999
Esi_0003_0266	IGPS-2	D7FW59	D7G2M9	Anthranilate Phosphoribosyltransferase.	annotation not available	0.999
Esi_0003_0266	IGPS-3	D7FW59	D8LBG8	Anthranilate Phosphoribosyltransferase.	Indole-3-glycerol-phosphate synthase.	0.960
Esi_0003_0266	PABS	D7FW59	D7FWN2	Anthranilate Phosphoribosyltransferase.	p-Aminobenzoate Synthase (C-terminal region) p-Aminobenzoate Synthase (N-terminal region).	0.996