Esi_0122_0023 protein (Ectocarpus siliculosus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Esi_0122_0023

Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (561 aa)

Predicted Functional Partners:

KAP3

0.768

Esi_0068_0071

0.604

Esi_0068_0072

0.604

Esi_0068_0074

0.604

DAF10

0.505

IFT80

0.495

Esi_0066_0043

0.495

Esi_0162_0064

0.476

IFT140

0.475

Esi_0172_0051

0.473

Your Current Organism:

Ectocarpus siliculosus

NCBI taxonomy Id: 2880
Other names: E. siliculosus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DAF10	Esi_0066_0043	D7FXW9	D8LRF2	Intraflagellar transport protein 122A intraflagellar transport protein.	Uncharacterized protein.	0.755
DAF10	Esi_0122_0023	D7FXW9	D7FIK9	Intraflagellar transport protein 122A intraflagellar transport protein.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.505
DAF10	Esi_0172_0051	D7FXW9	D7FMZ3	Intraflagellar transport protein 122A intraflagellar transport protein.	Flagellar associated protein.	0.852
DAF10	IFT140	D7FXW9	D8LH96	Intraflagellar transport protein 122A intraflagellar transport protein.	Intraflagellar transport protein 140 puative.	0.996
DAF10	IFT80	D7FXW9	D8LIC7	Intraflagellar transport protein 122A intraflagellar transport protein.	Intraflagellar transport protein 80.	0.806
DAF10	KAP3	D7FXW9	D8LIA4	Intraflagellar transport protein 122A intraflagellar transport protein.	Kinesin-associated protein.	0.721
Esi_0066_0043	DAF10	D8LRF2	D7FXW9	Uncharacterized protein.	Intraflagellar transport protein 122A intraflagellar transport protein.	0.755
Esi_0066_0043	Esi_0122_0023	D8LRF2	D7FIK9	Uncharacterized protein.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.495
Esi_0066_0043	Esi_0172_0051	D8LRF2	D7FMZ3	Uncharacterized protein.	Flagellar associated protein.	0.972
Esi_0066_0043	IFT140	D8LRF2	D8LH96	Uncharacterized protein.	Intraflagellar transport protein 140 puative.	0.841
Esi_0066_0043	KAP3	D8LRF2	D8LIA4	Uncharacterized protein.	Kinesin-associated protein.	0.723
Esi_0068_0071	Esi_0122_0023	D7G5X2	D7FIK9	UCH_1 domain-containing protein.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.604
Esi_0068_0072	Esi_0122_0023	D7G5X3	D7FIK9	Uncharacterized protein.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.604
Esi_0068_0074	Esi_0122_0023	D7G5X4	D7FIK9	F1E22.3.	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.604
Esi_0122_0023	DAF10	D7FIK9	D7FXW9	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Intraflagellar transport protein 122A intraflagellar transport protein.	0.505
Esi_0122_0023	Esi_0066_0043	D7FIK9	D8LRF2	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein.	0.495
Esi_0122_0023	Esi_0068_0071	D7FIK9	D7G5X2	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	UCH_1 domain-containing protein.	0.604
Esi_0122_0023	Esi_0068_0072	D7FIK9	D7G5X3	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein.	0.604
Esi_0122_0023	Esi_0068_0074	D7FIK9	D7G5X4	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	F1E22.3.	0.604
Esi_0122_0023	Esi_0162_0064	D7FIK9	D7FM06	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Similar to SET domain, bifurcated 1.	0.476