STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DAPATLL-diaminopimelate aminotransferase diaminopimelate aminotransferase. (468 aa)    
Predicted Functional Partners:
IGPS-2
annotation not available
    
 0.950
IGPS
Indole-3-glycerol-phosphate synthase.
    
 0.937
Esi_0281_0043
Bifunctional Indole-3-Glycerol Phosphate Synthase/Phosphoribosylanthranilate Isomerase (C-terminal).
    
 0.899
Esi_0281_0044
Bifunctional Indole-3-Glycerol Phosphate Synthase/Phosphoribosylanthranilate Isomerase (N-terminal).
    
 0.899
ICS
Similar to Isochorismate Synthase.
   
 0.841
Esi_0391_0022
Diaminopimelate epimerase.
  
 0.834
Esi_0036_0051
Tryptophan synthase (Alpha / beta chains).
  
 
 0.829
Esi_0060_0108
Tryptophan synthase (Alpha / beta chains).
  
 
 0.829
Esi_0033_0021
Haloacid dehalogenase-like hydrolase family protein.
  
 
 0.825
DHDPR
Dihydrodipicolinate reductase.
     
  0.769
Your Current Organism:
Ectocarpus siliculosus
NCBI taxonomy Id: 2880
Other names: E. siliculosus
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