STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Esi_0136_0008Rho guanine nucleotide exchange factor. (1172 aa)    
Predicted Functional Partners:
Esi_0362_0005
Uncharacterized protein.
    
 0.743
Esi_0185_0042
DEAD box helicase similar to CG7922-PA.
    
 0.731
Esi_0073_0118
DNA polymerase.
   
 0.675
DNA-2
DNA polymerase.
   
 0.675
SmD2
Small nuclear ribonucleoprotein Sm D2.
    
 0.643
Esi_0533_0015
ERCC4 domain containing protein.
    
 0.629
Esi_0006_0201
ERCC4 domain containing protein.
    
 0.629
SmE
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.628
SmD1
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
    
 0.614
LSm10
Putaive LSm10 protein.
    
 0.614
Your Current Organism:
Ectocarpus siliculosus
NCBI taxonomy Id: 2880
Other names: E. siliculosus
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