STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSm14-2Novel Sm-like protein with long N-and C-terminal domains. (327 aa)    
Predicted Functional Partners:
Esi_0021_0125
DEAD box helicase.
   
 
 0.968
Esi_0010_0022
Nudix hydrolase domain-containing protein.
    
 
 0.922
Esi_0489_0024
Uncharacterized protein.
    
 
 0.921
Esi_0087_0072
Chromodomain-helicase-DNA-binding protein 8.
   
 
 0.721
Esi_0012_0057
Uncharacterized protein.
   
 
 0.721
Esi_0126_0065
Uncharacterized protein.
   
 
 0.721
SNF2
CHROMODOMAIN HELICASE DNA BINDING.
   
 
 0.721
Esi_0207_0057
Pyridoxamine 5'-phosphate oxidase.
    
 
 0.631
Esi_0036_0012
NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX; Belongs to the NnrE/AIBP family.
    
 
 0.631
Esi_0006_0173
Pyridoxine/pyridoxamine 5'-phosphate oxidase.
    
 
 0.631
Your Current Organism:
Ectocarpus siliculosus
NCBI taxonomy Id: 2880
Other names: E. siliculosus
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