STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Esi_0140_0044Rhomboid domain-containing protein. (269 aa)    
Predicted Functional Partners:
Esi_0067_0034
Tha4/Hcf106 protein.
   
 
 0.748
Esi_0203_0046
5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
  
    0.542
Esi_0236_0003
Uncharacterized protein.
    
  0.492
Esi_0044_0086
Galactokinase (Galactose kinase).
    
  0.492
Phb2
Prohibitin.
  
 0.488
Esi_0044_0125
Rhomboid domain-containing protein.
      
 0.476
D1
D1 carboxyterminal protease.
  
 0.467
Phb1
Prohibitin.
  
 0.467
Esi_0049_0096
Carboxyl-terminal protease.
  
 0.467
Esi_0100_0052
PHB domain-containing protein.
  
 0.467
Your Current Organism:
Ectocarpus siliculosus
NCBI taxonomy Id: 2880
Other names: E. siliculosus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.