STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Esi_0169_00085'-3' exoribonuclease 1 (Exonuclease 2) (Exonuclease II) (Exo II) (P140). (662 aa)    
Predicted Functional Partners:
Esi_0561_0009
5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II.
 
 
 0.989
Esi_0169_0012
5'-3' exoribonuclease 1.
 
     0.940
Esi_0489_0024
Uncharacterized protein.
    
 0.929
Esi_0010_0022
Nudix hydrolase domain-containing protein.
   
 0.891
LSm1
U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.
    
 0.843
LSm3
U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
 0.836
Esi_0044_0056
Uncharacterized protein.
    
 0.834
Esi_0003_0012
RNase_PH domain-containing protein.
    
 0.738
Esi_0141_0007
S1 motif domain-containing protein.
    
 0.722
Esi_0134_0067
Similar to exosome component 6.
    
 0.703
Your Current Organism:
Ectocarpus siliculosus
NCBI taxonomy Id: 2880
Other names: E. siliculosus
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