STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rimMProbable 16S rRNA-processing protein rimM. (422 aa)    
Predicted Functional Partners:
Esi_0006_0009
annotation not available
  
 0.754
Esi_0002_0317
Uncharacterized protein.
   
 0.734
Esi_0430_0005
Uncharacterized protein.
   
 0.734
Esi_0144_0004
UTP--glucose-1-phosphate uridylyltransferase.
   
 
 0.670
ALGC
Phosphomannomutase/phosphoglucomutase.
  
 0.640
ALGC-2
Phosphomannomutase/phosphoglucomutase, C-terminal.
  
 0.640
Esi_0278_0001
Uncharacterized protein; Belongs to the phosphohexose mutase family.
  
 0.640
Esi_0010_0205
ROK family glucokinase.
     
 0.629
Esi_0194_0052
Ankyrin repeat domain 3.
    
  0.625
Esi_0004_0073
Similar to ankyrin 2,3/unc44.
    
  0.625
Your Current Organism:
Ectocarpus siliculosus
NCBI taxonomy Id: 2880
Other names: E. siliculosus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.