STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HCFPhotosystem II stability/assembly factor HCF136. (424 aa)    
Predicted Functional Partners:
Esi_0196_0048
Uncharacterized protein.
     
 0.981
Esi_0301_0020
Uncharacterized protein.
     
 0.981
Esi_0022_0053
Proteasome subunit alpha type.
    
   0.888
Esi_0059_0118
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
    
 
 0.802
SNX1
Sorting nexin 1.
    
 0.799
Esi_0111_0048
Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.
    
   0.795
Esi_0028_0142
Uncharacterized protein.
    
   0.795
Esi_0003_0161
Proteasome subunit alpha type.
    
   0.764
Esi_0347_0034
Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.
    
   0.764
Esi_0071_0048
20S proteasome alpha subunit C.
    
   0.764
Your Current Organism:
Ectocarpus siliculosus
NCBI taxonomy Id: 2880
Other names: E. siliculosus
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