STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBGDHydroxymethylbilane synthase, putative chloroplast. (373 aa)    
Predicted Functional Partners:
ALAD
Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
 
 0.996
UPM
Uroporphyrinogen-III C-methyltransferase, putative chloroplast.
 
 0.994
GTR
Glutamyl-tRNA reductase; Belongs to the glutamyl-tRNA reductase family.
  
 0.993
UROD3
Uroporphyrinogen decarboxylase, chloroplast.
 
 0.933
UROD2
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
 
 0.910
UROD1
Uroporphyrinogen decarboxylase, chloroplast.
 
 0.875
Esi_0053_0087
Uncharacterized protein.
  
 0.874
FECH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
  
  
 0.779
UROS
Uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
     
 0.759
GSA
Glutamate-1-semialdehyde 2,1-aminomutase, putative chloroplast; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.652
Your Current Organism:
Ectocarpus siliculosus
NCBI taxonomy Id: 2880
Other names: E. siliculosus
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