STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Esi_0185_0042DEAD box helicase similar to CG7922-PA. (2654 aa)    
Predicted Functional Partners:
rpl1
50S ribosomal protein L1, chloroplastic; Binds directly to 23S rRNA. Might be involved in E site tRNA release.
    
 0.999
Esi_0231_0014
Putative, spindle assembly abnormal protein 6.
   
 0.999
Esi_0279_0024
Replication protein A subunit.
   
 0.999
Esi_0279_0025
Rep-A_N domain-containing protein.
   
 0.999
Esi_0040_0114
NTF2 domain-containing protein.
    
 0.999
Esi_0058_0001
Uncharacterized protein.
   
 0.999
Esi_0041_0124
Uncharacterized protein.
   
 0.999
Esi_0005_0219
60S ribosomal protein L10A.
    
 0.999
Esi_0052_0197
Uncharacterized protein.
   
 0.999
Esi_0056_0103
Uncharacterized protein.
    
 0.999
Your Current Organism:
Ectocarpus siliculosus
NCBI taxonomy Id: 2880
Other names: E. siliculosus
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