STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IPPPutative tRNA isopentenyltransferase; Belongs to the IPP transferase family. (543 aa)    
Predicted Functional Partners:
IDI2
Isopentenyl-diphosphate delta-isomerase type 1.
    
 0.804
FPPS
Farnesyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
    
 0.773
Esi_0334_0018
Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase; Methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs.
  
  
 0.722
SPPS
Solanesyl diphosphate synthase-like protein; Belongs to the FPP/GGPP synthase family.
  
 
 0.704
GGPPS1
Geranylgeranyl pyrophosphate synthetase, chloroplast.
  
 
 0.704
GGPPS1-2
Geranylgeranyl pyrophosphate synthase, chloroplast; Belongs to the FPP/GGPP synthase family.
  
 
 0.704
GPPS
Geranyl-diphosphate synthase.
  
 
 0.704
MHflX
MHflX, mitochondrial HflX GTPase.
  
  
 0.687
PHflX
PHflX, plastid HflX GTPase.
  
  
 0.687
Esi_0233_0010
Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.
  
  
 0.681
Your Current Organism:
Ectocarpus siliculosus
NCBI taxonomy Id: 2880
Other names: E. siliculosus
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