STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBipAPBipA, plastid GTPase BipA/TypA. (647 aa)    
Predicted Functional Partners:
Esi_0062_0008
Ribosomal_L18_c domain-containing protein.
   
 
 0.737
Esi_0073_0071
KH type-2 domain-containing protein.
   
 
 0.718
rpl27
50S ribosomal protein L27, chloroplastic.
  
   0.693
Esi_0103_0025
Uncharacterized protein.
    
 
 0.693
Esi_0026_0025
Ribosomal protein L35, isoform CRA_b.
    
 
 0.690
rps20
30S ribosomal protein S20, chloroplastic; Binds directly to 16S ribosomal RNA; Belongs to the bacterial ribosomal protein bS20 family.
   
   0.688
rpl1
50S ribosomal protein L1, chloroplastic; Binds directly to 23S rRNA. Might be involved in E site tRNA release.
   
 
 0.685
Esi_0005_0219
60S ribosomal protein L10A.
   
 
 0.685
Esi_0184_0026
Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.
   
 
 0.675
Esi_0120_0053
Uncharacterized protein.
  
   0.672
Your Current Organism:
Ectocarpus siliculosus
NCBI taxonomy Id: 2880
Other names: E. siliculosus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.