STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Esi_0046_0039Uncharacterized protein; Belongs to the SKP1 family. (183 aa)    
Predicted Functional Partners:
Esi_0043_0148
Similar to DNA (Cytosine-5-)-methyltransferase (Partial).
   
 0.999
Esi_0201_0044
F-box domain-containing protein.
    
 0.974
Esi_0079_0055
RING-type domain-containing protein.
   
 0.963
Esi_0079_0058
RING-type domain-containing protein.
   
 0.963
WD40
Possible ribosome assembly protein 4.
    
 0.960
Esi_0015_0085
WD-40 repeat protein.
    
 0.960
SGT1-like
SGT1 homologue.
   
 
 0.937
Esi_0002_0234
CS domain-containing protein.
   
 0.932
rpl2
50S ribosomal protein L2, chloroplastic; Belongs to the universal ribosomal protein uL2 family.
   
 0.923
Esi_0175_0007
Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.
    
  0.920
Your Current Organism:
Ectocarpus siliculosus
NCBI taxonomy Id: 2880
Other names: E. siliculosus
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