STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Esi_0548_0001Hypothetical leucine rich repeat protein. (446 aa)    
Predicted Functional Partners:
Esi_0006_0052
Ankyrin.
    
  0.680
Esi_0195_0008
CSD domain-containing protein.
    
  0.648
Esi_0180_0039
RNA binding / nucleic acid binding.
    
 0.624
SmD2
Small nuclear ribonucleoprotein Sm D2.
    
 0.619
SmE
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
 0.616
Esi_0194_0052
Ankyrin repeat domain 3.
    
  0.605
Esi_0004_0073
Similar to ankyrin 2,3/unc44.
    
  0.605
SmF
Small nuclear ribonucleoprotein SmF.
    
  0.601
SmB
Small nuclear ribonucleoprotein-associated protein.
    
  0.601
SmG
Small nuclear ribonucleoprotein G.
    
  0.600
Your Current Organism:
Ectocarpus siliculosus
NCBI taxonomy Id: 2880
Other names: E. siliculosus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.