STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Esi_0580_0006DUF4033 domain-containing protein. (299 aa)    
Predicted Functional Partners:
LCYB
Lycopene beta cyclase, chloroplast.
  
  
 0.816
CYP5161A1
Cytochrome P450; Belongs to the cytochrome P450 family.
     
 0.561
CYP5161B1
Cytochrome P450.
     
 0.561
Esi_0155_0052
Lignostilbene-alpha beta-dioxygenase.
     
 0.547
Esi_0165_0022
Uncharacterized protein.
     
 0.547
Esi_0165_0023
Uncharacterized protein.
     
 0.547
Esi_0023_0168
Carotenoid oxygenase.
     
 0.547
Esi_0053_0047
Uncharacterized protein.
     
 0.547
LHCP33
Light harvesting complex protein.
  
     0.508
LHCP30
Light harvesting complex protein.
  
     0.501
Your Current Organism:
Ectocarpus siliculosus
NCBI taxonomy Id: 2880
Other names: E. siliculosus
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