WD40-3 protein (Ectocarpus siliculosus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

WD40-3

WD40 domain containing protein. (1392 aa)

Predicted Functional Partners:

Esi_0010_0146

0.897

KATNA1

0.897

Esi_0031_0072

0.618

Esi_0252_0032

0.606

Esi_0453_0018

0.606

Esi_0455_0003

0.606

Esi_0000_0648

0.606

Esi_0131_0080

0.606

Esi_0141_0073

0.606

Esi_0345_0026

0.404

Your Current Organism:

Ectocarpus siliculosus

NCBI taxonomy Id: 2880
Other names: E. siliculosus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Esi_0000_0648	WD40-3	D8LBU3	D7G633	AAA domain-containing protein.	WD40 domain containing protein.	0.606
Esi_0010_0146	WD40-3	D8LC34	D7G633	Uncharacterized protein.	WD40 domain containing protein.	0.897
Esi_0031_0072	Esi_0453_0018	D8LKV9	D7G1N3	AAA domain-containing protein; Belongs to the AAA ATPase family.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.999
Esi_0031_0072	Esi_0455_0003	D8LKV9	D7G1P5	AAA domain-containing protein; Belongs to the AAA ATPase family.	26S proteasome regulatory ATPase subunit; Belongs to the AAA ATPase family.	0.999
Esi_0031_0072	WD40-3	D8LKV9	D7G633	AAA domain-containing protein; Belongs to the AAA ATPase family.	WD40 domain containing protein.	0.618
Esi_0131_0080	WD40-3	D8LEJ8	D7G633	Glycerol kinase; Belongs to the FGGY kinase family.	WD40 domain containing protein.	0.606
Esi_0141_0073	WD40-3	D8LF76	D7G633	Carbohydrate kinase.	WD40 domain containing protein.	0.606
Esi_0252_0032	WD40-3	D7FTM7	D7G633	Xylulose kinase.	WD40 domain containing protein.	0.606
Esi_0345_0026	WD40-3	D7FYJ4	D7G633	Uncharacterized protein.	WD40 domain containing protein.	0.404
Esi_0453_0018	Esi_0031_0072	D7G1N3	D8LKV9	AAA domain-containing protein; Belongs to the AAA ATPase family.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.999
Esi_0453_0018	Esi_0455_0003	D7G1N3	D7G1P5	AAA domain-containing protein; Belongs to the AAA ATPase family.	26S proteasome regulatory ATPase subunit; Belongs to the AAA ATPase family.	0.999
Esi_0453_0018	WD40-3	D7G1N3	D7G633	AAA domain-containing protein; Belongs to the AAA ATPase family.	WD40 domain containing protein.	0.606
Esi_0455_0003	Esi_0031_0072	D7G1P5	D8LKV9	26S proteasome regulatory ATPase subunit; Belongs to the AAA ATPase family.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.999
Esi_0455_0003	Esi_0453_0018	D7G1P5	D7G1N3	26S proteasome regulatory ATPase subunit; Belongs to the AAA ATPase family.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.999
Esi_0455_0003	WD40-3	D7G1P5	D7G633	26S proteasome regulatory ATPase subunit; Belongs to the AAA ATPase family.	WD40 domain containing protein.	0.606
KATNA1	WD40-3	D8LRZ3	D7G633	Katanin p60 ATPase-containing subunit A1; Severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.	WD40 domain containing protein.	0.897
WD40-3	Esi_0000_0648	D7G633	D8LBU3	WD40 domain containing protein.	AAA domain-containing protein.	0.606
WD40-3	Esi_0010_0146	D7G633	D8LC34	WD40 domain containing protein.	Uncharacterized protein.	0.897
WD40-3	Esi_0031_0072	D7G633	D8LKV9	WD40 domain containing protein.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.618
WD40-3	Esi_0131_0080	D7G633	D8LEJ8	WD40 domain containing protein.	Glycerol kinase; Belongs to the FGGY kinase family.	0.606