Esi_0085_0012 protein (Ectocarpus siliculosus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Esi_0085_0012

Dihydrouridine synthase. (450 aa)

Predicted Functional Partners:

GLURS

0.753

Esi_0070_0043

0.530

Esi_0094_0071

0.510

Esi_0078_0058

0.510

Esi_0003_0239

0.476

Esi_0179_0060

0.472

Esi_0052_0196

0.460

Esi_0324_0024

0.459

Esi_0016_0102

0.453

Esi_0356_0023

0.452

Your Current Organism:

Ectocarpus siliculosus

NCBI taxonomy Id: 2880
Other names: E. siliculosus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Esi_0003_0239	Esi_0016_0102	D7FW53	D7FLK1	Uncharacterized protein.	Methyltransf_25 domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	0.505
Esi_0003_0239	Esi_0052_0196	D7FW53	D8LPM6	Uncharacterized protein.	Uncharacterized protein.	0.476
Esi_0003_0239	Esi_0078_0058	D7FW53	D8LT48	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.400
Esi_0003_0239	Esi_0085_0012	D7FW53	D7G7Q4	Uncharacterized protein.	Dihydrouridine synthase.	0.476
Esi_0003_0239	Esi_0094_0071	D7FW53	D7G924	Uncharacterized protein.	UPF0020 domain-containing protein.	0.400
Esi_0003_0239	Esi_0179_0060	D7FW53	D7FNE7	Uncharacterized protein.	DEAD box helicase.	0.918
Esi_0003_0239	Esi_0324_0024	D7FW53	D7FXC7	Uncharacterized protein.	Similar to WD repeat domain 36.	0.995
Esi_0003_0239	Esi_0356_0023	D7FW53	D7FZ70	Uncharacterized protein.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.996
Esi_0016_0102	Esi_0003_0239	D7FLK1	D7FW53	Methyltransf_25 domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	Uncharacterized protein.	0.505
Esi_0016_0102	Esi_0052_0196	D7FLK1	D8LPM6	Methyltransf_25 domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	Uncharacterized protein.	0.507
Esi_0016_0102	Esi_0078_0058	D7FLK1	D8LT48	Methyltransf_25 domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	ANK_REP_REGION domain-containing protein.	0.509
Esi_0016_0102	Esi_0085_0012	D7FLK1	D7G7Q4	Methyltransf_25 domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	Dihydrouridine synthase.	0.453
Esi_0016_0102	Esi_0094_0071	D7FLK1	D7G924	Methyltransf_25 domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	UPF0020 domain-containing protein.	0.509
Esi_0016_0102	Esi_0179_0060	D7FLK1	D7FNE7	Methyltransf_25 domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	DEAD box helicase.	0.615
Esi_0016_0102	Esi_0324_0024	D7FLK1	D7FXC7	Methyltransf_25 domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	Similar to WD repeat domain 36.	0.508
Esi_0016_0102	Esi_0356_0023	D7FLK1	D7FZ70	Methyltransf_25 domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.613
Esi_0052_0196	Esi_0003_0239	D8LPM6	D7FW53	Uncharacterized protein.	Uncharacterized protein.	0.476
Esi_0052_0196	Esi_0016_0102	D8LPM6	D7FLK1	Uncharacterized protein.	Methyltransf_25 domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	0.507
Esi_0052_0196	Esi_0070_0043	D8LPM6	D8LS60	Uncharacterized protein.	Uncharacterized protein.	0.530
Esi_0052_0196	Esi_0078_0058	D8LPM6	D8LT48	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.424