STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Esi_0092_0014WD_REPEATS_REGION domain-containing protein. (874 aa)    
Predicted Functional Partners:
Esi_0173_0001
FirrV-1-B30.
    
 0.998
Esi_0173_0004
FirrV-1-B30.
    
 0.998
Esi_0002_0151
Similar to MGC81978 protein.
   
 0.980
Esi_0216_0033
Chromatin binding protein, putative.
   
 0.974
Rb
Putative retinoblastoma.
   
 0.952
Esi_0147_0031
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.929
Esi_0092_0077
Hist_deacetyl domain-containing protein.
   
 0.929
Esi_0181_0051
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.929
Esi_0134_0050
WD_REPEATS_REGION domain-containing protein.
   
 
 0.924
Esi_0057_0057
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.922
Your Current Organism:
Ectocarpus siliculosus
NCBI taxonomy Id: 2880
Other names: E. siliculosus
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