STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Esi_0000_0123Uncharacterized protein. (787 aa)    
Predicted Functional Partners:
rbcL
Ribulose bisphosphate carboxylase large chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.
    
 0.603
Esi_0091_0014
Carboxylase.
    
 0.603
Esi_0006_0178
Carboxylase.
    
 0.603
GCP
Spindle pole body component.
    
  0.592
Esi_0008_0051
Spindle pole body component.
    
  0.592
Esi_0206_0038
Tubulin binding.
    
  0.592
Esi_0029_0036
Spindle pole body component.
    
  0.586
Atg5
Autophagy protein 5; Involved in autophagic vesicle formation.
    
  0.564
TUG
Gamma tubulin; Belongs to the tubulin family.
   
  0.557
Esi_0129_0004
Tubulin; Belongs to the tubulin family.
   
  0.557
Your Current Organism:
Ectocarpus siliculosus
NCBI taxonomy Id: 2880
Other names: E. siliculosus
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