STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPERibulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. (276 aa)    
Predicted Functional Partners:
Esi_0002_0327
Transketolase.
  
 0.893
RPI
Ribose-5-phosphate isomerase.
  
 0.832
PRK
Phosphoribulokinase.
    
 0.824
Esi_0159_0020
6-phosphogluconate dehydrogenase, decarboxylating; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
   
 0.817
Esi_0003_0136
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.
  
 0.814
Esi_0401_0019
Transaldolase B.
  
 0.785
Esi_0010_0205
ROK family glucokinase.
  
 
 0.757
Esi_0187_0020
Uncharacterized protein.
  
 0.749
DXS
1-deoxy-D-xylulose 5-phosphate synthase, chloroplast.
  
 0.749
Esi_0198_0021
TRANSKETOLASE_1 domain-containing protein.
  
 0.749
Your Current Organism:
Ectocarpus siliculosus
NCBI taxonomy Id: 2880
Other names: E. siliculosus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.