STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Esi_0103_0062tRNA-methyltransferase. (478 aa)    
Predicted Functional Partners:
Esi_0358_0006
Serine/threonine kinase, putative.
   
  0.530
Esi_0155_0005
Protein kinase domain containing protein.
   
  0.530
Esi_0538_0010
annotation not available
   
  0.530
Esi_0104_0026
GIDA_assoc domain-containing protein.
  
 
 0.519
GLURS
Glutamyl-tRNA Synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.509
Esi_0171_0049
Endothelial monocyte-activating polypeptide II pro-EMAP II family protein.
  
  
 0.452
Esi_0107_0056
Putative microtubule-associated protein EB1.
    
  0.447
Esi_0279_0010
Class-V aminotransferase.
  
  
 0.439
NFS
Cysteine desulfurase.
  
  
 0.439
NFS-2
Cysteine desulfurase.
  
  
 0.439
Your Current Organism:
Ectocarpus siliculosus
NCBI taxonomy Id: 2880
Other names: E. siliculosus
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