Esi_0112_0044 protein (Ectocarpus siliculosus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Esi_0112_0044

Protein arginine methyltransferase NDUFAF7; Arginine methyltransferase involved in the assembly or stability of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I). (494 aa)

Predicted Functional Partners:

Esi_0292_0030

0.881

NUOI

0.812

NUO10

0.808

NDA-5

0.780

Esi_0234_0020

0.777

Esi_0035_0036

0.749

Esi_0289_0041

0.743

Esi_0355_0019

0.730

Esi_0073_0112

0.720

NDA-2

0.718

Your Current Organism:

Ectocarpus siliculosus

NCBI taxonomy Id: 2880
Other names: E. siliculosus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Esi_0035_0036	Esi_0073_0112	D7FYS9	D7G6C8	Uncharacterized protein.	L51_S25_CI-B8 domain-containing protein.	0.999
Esi_0035_0036	Esi_0112_0044	D7FYS9	D8LD00	Uncharacterized protein.	Protein arginine methyltransferase NDUFAF7; Arginine methyltransferase involved in the assembly or stability of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).	0.749
Esi_0035_0036	Esi_0234_0020	D7FYS9	D7FSI4	Uncharacterized protein.	Uncharacterized protein.	0.725
Esi_0035_0036	Esi_0289_0041	D7FYS9	D7FV73	Uncharacterized protein.	Uncharacterized protein.	0.994
Esi_0035_0036	Esi_0292_0030	D7FYS9	D8LKB8	Uncharacterized protein.	Methyltransf_11 domain-containing protein.	0.774
Esi_0035_0036	Esi_0355_0019	D7FYS9	D7FZ56	Uncharacterized protein.	Uncharacterized protein.	0.999
Esi_0035_0036	NDA-2	D7FYS9	D7FPR2	Uncharacterized protein.	NADH dehydrogenase (Ubiquinone); Belongs to the complex I LYR family.	0.999
Esi_0035_0036	NDA-5	D7FYS9	D7FUY2	Uncharacterized protein.	NADH dehydrogenase (Ubiquinone).	0.999
Esi_0035_0036	NUO10	D7FYS9	D8LIF1	Uncharacterized protein.	NUO10 homolog, NADH dehydrogenase (Ubiquinone) subunit 10; Belongs to the complex I 20 kDa subunit family.	0.998
Esi_0035_0036	NUOI	D7FYS9	D8LDR9	Uncharacterized protein.	NUOI homolog, NADH dehydrogenase (Ubiquinone) subunit.	0.999
Esi_0073_0112	Esi_0035_0036	D7G6C8	D7FYS9	L51_S25_CI-B8 domain-containing protein.	Uncharacterized protein.	0.999
Esi_0073_0112	Esi_0112_0044	D7G6C8	D8LD00	L51_S25_CI-B8 domain-containing protein.	Protein arginine methyltransferase NDUFAF7; Arginine methyltransferase involved in the assembly or stability of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).	0.720
Esi_0073_0112	Esi_0234_0020	D7G6C8	D7FSI4	L51_S25_CI-B8 domain-containing protein.	Uncharacterized protein.	0.710
Esi_0073_0112	Esi_0289_0041	D7G6C8	D7FV73	L51_S25_CI-B8 domain-containing protein.	Uncharacterized protein.	0.739
Esi_0073_0112	Esi_0292_0030	D7G6C8	D8LKB8	L51_S25_CI-B8 domain-containing protein.	Methyltransf_11 domain-containing protein.	0.759
Esi_0073_0112	Esi_0355_0019	D7G6C8	D7FZ56	L51_S25_CI-B8 domain-containing protein.	Uncharacterized protein.	0.999
Esi_0073_0112	NDA-2	D7G6C8	D7FPR2	L51_S25_CI-B8 domain-containing protein.	NADH dehydrogenase (Ubiquinone); Belongs to the complex I LYR family.	0.999
Esi_0073_0112	NDA-5	D7G6C8	D7FUY2	L51_S25_CI-B8 domain-containing protein.	NADH dehydrogenase (Ubiquinone).	0.998
Esi_0073_0112	NUO10	D7G6C8	D8LIF1	L51_S25_CI-B8 domain-containing protein.	NUO10 homolog, NADH dehydrogenase (Ubiquinone) subunit 10; Belongs to the complex I 20 kDa subunit family.	0.996
Esi_0073_0112	NUOI	D7G6C8	D8LDR9	L51_S25_CI-B8 domain-containing protein.	NUOI homolog, NADH dehydrogenase (Ubiquinone) subunit.	0.999

page 1 of 6

Server load: low (26%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About