STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Esi_0012_0100Ubiquitin carboxyl-terminal hydrolase. (937 aa)    
Predicted Functional Partners:
Esi_0302_0019
Similar to ubiquitin.
    
 0.955
Esi_0010_0201
Uncharacterized protein.
    
 0.955
Esi_0023_0071
Similar polyubiquitin.
    
 0.955
Esi_0529_0011
RING-type domain-containing protein.
    
 0.945
Esi_0055_0100
Ubiquitin-like domain-containing protein.
    
 0.945
Esi_0095_0039
Ubiquitin UbiA.
    
 0.945
Esi_0150_0046
Uncharacterized protein.
    
 0.921
Esi_0013_0071
Similar to ubiquitin and ribosomal protein S27a.
    
 0.921
Esi_0070_0049
Ubiquitin.
    
 0.921
Esi_0009_0071
Ubiquitin-like domain-containing protein.
    
 0.921
Your Current Organism:
Ectocarpus siliculosus
NCBI taxonomy Id: 2880
Other names: E. siliculosus
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