Esi_0014_0190 protein (Ectocarpus siliculosus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Esi_0014_0190

DEAD box helicase. (572 aa)

Predicted Functional Partners:

Esi_0088_0044

0.827

Ngp1

0.792

Esi_0004_0088

0.785

Esi_0201_0039

0.775

Nug1

0.768

PYlqF

0.768

Esi_0006_0078

0.764

Esi_0333_0005

0.763

Esi_0073_0055

0.763

Esi_0021_0005

0.762

Your Current Organism:

Ectocarpus siliculosus

NCBI taxonomy Id: 2880
Other names: E. siliculosus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Esi_0004_0088	Esi_0006_0078	D8LMB6	D8LQF6	Uncharacterized protein.	Uncharacterized protein.	0.880
Esi_0004_0088	Esi_0014_0190	D8LMB6	D8LF19	Uncharacterized protein.	DEAD box helicase.	0.785
Esi_0004_0088	Esi_0021_0005	D8LMB6	D7FR23	Uncharacterized protein.	KH domain-containing protein.	0.910
Esi_0004_0088	Esi_0073_0055	D8LMB6	D7G698	Uncharacterized protein.	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	0.998
Esi_0004_0088	Esi_0088_0044	D8LMB6	D7G8B4	Uncharacterized protein.	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	0.999
Esi_0004_0088	Esi_0201_0039	D8LMB6	D8LI35	Uncharacterized protein.	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.	0.997
Esi_0004_0088	Esi_0333_0005	D8LMB6	D7FXU6	Uncharacterized protein.	Nop domain-containing protein.	0.956
Esi_0004_0088	Ngp1	D8LMB6	D8LTC1	Uncharacterized protein.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.985
Esi_0004_0088	Nug1	D8LMB6	D7G1C4	Uncharacterized protein.	Nug1, nuclear ribosome-associated GTPase.	0.993
Esi_0004_0088	PYlqF	D8LMB6	D7G6Q7	Uncharacterized protein.	PYlqF, plastid YlqF/RbgA-like GTPase.	0.993
Esi_0006_0078	Esi_0004_0088	D8LQF6	D8LMB6	Uncharacterized protein.	Uncharacterized protein.	0.880
Esi_0006_0078	Esi_0014_0190	D8LQF6	D8LF19	Uncharacterized protein.	DEAD box helicase.	0.764
Esi_0006_0078	Esi_0021_0005	D8LQF6	D7FR23	Uncharacterized protein.	KH domain-containing protein.	0.998
Esi_0006_0078	Esi_0073_0055	D8LQF6	D7G698	Uncharacterized protein.	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	0.887
Esi_0006_0078	Esi_0088_0044	D8LQF6	D7G8B4	Uncharacterized protein.	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	0.865
Esi_0006_0078	Esi_0201_0039	D8LQF6	D8LI35	Uncharacterized protein.	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.	0.650
Esi_0006_0078	Esi_0333_0005	D8LQF6	D7FXU6	Uncharacterized protein.	Nop domain-containing protein.	0.995
Esi_0006_0078	Ngp1	D8LQF6	D8LTC1	Uncharacterized protein.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.864
Esi_0006_0078	Nug1	D8LQF6	D7G1C4	Uncharacterized protein.	Nug1, nuclear ribosome-associated GTPase.	0.824
Esi_0006_0078	PYlqF	D8LQF6	D7G6Q7	Uncharacterized protein.	PYlqF, plastid YlqF/RbgA-like GTPase.	0.824