STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Esi_0152_0057Threonine--tRNA ligase. (704 aa)    
Predicted Functional Partners:
rpl1
50S ribosomal protein L1, chloroplastic; Binds directly to 23S rRNA. Might be involved in E site tRNA release.
   
 
 0.922
rps14
30S ribosomal protein S14, chloroplastic; Binds 16S rRNA, required for the assembly of 30S particles.
   
 
 0.906
Esi_0149_0012
Tim44 domain-containing protein.
   
 
 0.889
PRP
Chloroplast 50S ribosomal protein L15.
   
 
 0.886
Esi_0441_0012
Ribosomal_L18e/L15P domain-containing protein.
   
 
 0.886
Esi_0010_0112
RF_PROK_I domain-containing protein.
  
 
 0.885
rpl27
50S ribosomal protein L27, chloroplastic.
  
 
 0.884
Esi_0142_0038
Similar to Tyrosyl-tRNA synthetase, cytoplasmic (Tyrosyl--tRNA ligase) (TyrRS).
  
 
 0.881
rps12
30S ribosomal protein S12, chloroplastic; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits.
  
 
 0.876
Esi_0000_0053
Uncharacterized protein.
   
 
 0.863
Your Current Organism:
Ectocarpus siliculosus
NCBI taxonomy Id: 2880
Other names: E. siliculosus
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