STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TrmETrmE, organellal GTPase involved in tRNA modification. (790 aa)    
Predicted Functional Partners:
Esi_0104_0026
GIDA_assoc domain-containing protein.
 
 0.890
Mtg1
Mtg1, mitochondrial YlqF-like GTPase.
  
 
 0.875
rpl24
50S ribosomal protein L24, chloroplastic; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.
    
   0.846
Esi_0227_0053
Uncharacterized protein.
    
   0.846
Esi_0008_0244
L51_S25_CI-B8 domain-containing protein.
    
   0.846
Esi_0161_0062
tRNA/rRNA methyltransferase (SpoU).
   
 
 0.822
PRP
Chloroplast 50S ribosomal protein L15.
    
 
 0.773
Esi_0441_0012
Ribosomal_L18e/L15P domain-containing protein.
    
 
 0.773
rpl21_1
50S ribosomal protein L21, chloroplastic; This protein binds to 23S rRNA.
   
 
 0.766
Esi_0071_0005
Uncharacterized protein.
   
 
 0.766
Your Current Organism:
Ectocarpus siliculosus
NCBI taxonomy Id: 2880
Other names: E. siliculosus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.