STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZDSZeta-carotene desaturase, chloroplast. (600 aa)    
Predicted Functional Partners:
PSY
Phytoene synthase chloroplast.
   
 
 0.862
Esi_0142_0039
SANT domain-containing protein.
    
 0.847
LCYB
Lycopene beta cyclase, chloroplast.
     
 0.806
Esi_0172_0056
NnrU domain-containing protein.
  
  
 0.780
Esi_0036_0051
Tryptophan synthase (Alpha / beta chains).
    
 0.767
Esi_0060_0108
Tryptophan synthase (Alpha / beta chains).
    
 0.767
IDI1
annotation not available
   
 
 0.710
Esi_0037_0094
Histone H2B; Belongs to the histone H2B family.
    
  0.710
Esi_0234_0020
Uncharacterized protein.
   
 
 0.698
PGDH
Phosphoglycerate dehydrogenase, incomplete; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
 0.653
Your Current Organism:
Ectocarpus siliculosus
NCBI taxonomy Id: 2880
Other names: E. siliculosus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.