STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Esi_0271_0043Uncharacterized protein. (611 aa)    
Predicted Functional Partners:
Esi_0046_0137
TLC domain-containing protein.
    
 0.595
Esi_0529_0012
Sphingosine-1-phosphate phosphatase.
    
 0.587
Esi_0228_0028
RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs; Belongs to the RtcB family.
    
 0.572
Esi_0194_0038
acidPPc domain-containing protein.
    
 0.555
Esi_0067_0055
Phosphatidic acid phosphatase.
    
 0.555
Esi_0089_0095
Ubiquitin family protein.
    
 0.555
Sphk
Sphingosine kinase.
    
 0.545
Esi_0186_0006
Similar to neutral Sphingomyelinase, putative.
     
 0.533
Esi_0015_0036
Glucosylceramidase, family GH30.
     
 0.528
Esi_0051_0102
Uncharacterized protein.
    
  0.526
Your Current Organism:
Ectocarpus siliculosus
NCBI taxonomy Id: 2880
Other names: E. siliculosus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.