STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Esi_0005_0248tRNA (Guanine-N(7)-)-methyltransferase trmB. (375 aa)    
Predicted Functional Partners:
Esi_0196_0038
tRNA (Guanine-n(7)-)-methyltransferase complex subunit, putative.
   
 0.987
Esi_0079_0075
Uncharacterized protein.
  
 
 0.715
Esi_0303_0037
tRNA pseudouridine synthase B.
  
 
 0.655
Esi_0464_0017
TruB_N domain-containing protein.
  
 
 0.655
Esi_0014_0115
PUA domain-containing protein.
  
 
 0.655
Esi_0070_0071
Uncharacterized protein.
   
  
 0.643
Esi_0368_0024
Uncharacterized protein.
  
 
 0.620
Esi_0368_0028
SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
  
 
 0.620
Esi_0053_0024
Uncharacterized protein.
  
 
 0.620
Esi_0016_0192
rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.
  
  
 0.619
Your Current Organism:
Ectocarpus siliculosus
NCBI taxonomy Id: 2880
Other names: E. siliculosus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.