Esi_0516_0003 protein (Ectocarpus siliculosus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Esi_0516_0003

Exonuclease domain-containing protein. (722 aa)

Predicted Functional Partners:

PAR

0.924

Esi_0052_0133

0.872

Esi_0003_0098

0.820

PCNA

0.820

Esi_0052_0138

0.769

Esi_0016_0190

0.660

Esi_0161_0047

0.660

Esi_0172_0015

0.660

Esi_0075_0112

0.660

Esi_0320_0009

0.650

Your Current Organism:

Ectocarpus siliculosus

NCBI taxonomy Id: 2880
Other names: E. siliculosus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Esi_0003_0098	Esi_0016_0190	D7FVX7	D7FLP3	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	ATP-dependent DNA helicase.	0.714
Esi_0003_0098	Esi_0052_0133	D7FVX7	D8LPF2	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	EsV-1-126.	0.978
Esi_0003_0098	Esi_0075_0112	D7FVX7	D7G6K8	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	UvrD-like helicase C-terminal domain-containing protein.	0.714
Esi_0003_0098	Esi_0161_0047	D7FVX7	D7FLU8	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Superfamily I DNA/RNA helicase-like protein.	0.714
Esi_0003_0098	Esi_0172_0015	D7FVX7	D7FMX7	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	DNA helicase II.	0.714
Esi_0003_0098	Esi_0320_0009	D7FVX7	D7FX85	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Excinuclease ABC subunit C.	0.765
Esi_0003_0098	Esi_0516_0003	D7FVX7	D8LNZ2	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Exonuclease domain-containing protein.	0.820
Esi_0016_0190	Esi_0003_0098	D7FLP3	D7FVX7	ATP-dependent DNA helicase.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.714
Esi_0016_0190	Esi_0320_0009	D7FLP3	D7FX85	ATP-dependent DNA helicase.	Excinuclease ABC subunit C.	0.653
Esi_0016_0190	Esi_0516_0003	D7FLP3	D8LNZ2	ATP-dependent DNA helicase.	Exonuclease domain-containing protein.	0.660
Esi_0016_0190	PCNA	D7FLP3	D8LPF8	ATP-dependent DNA helicase.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.714
Esi_0052_0133	Esi_0003_0098	D8LPF2	D7FVX7	EsV-1-126.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.978
Esi_0052_0133	Esi_0320_0009	D8LPF2	D7FX85	EsV-1-126.	Excinuclease ABC subunit C.	0.827
Esi_0052_0133	Esi_0516_0003	D8LPF2	D8LNZ2	EsV-1-126.	Exonuclease domain-containing protein.	0.872
Esi_0052_0133	PCNA	D8LPF2	D8LPF8	EsV-1-126.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.978
Esi_0052_0138	Esi_0516_0003	D8LPG5	D8LNZ2	EsV-1-139.	Exonuclease domain-containing protein.	0.769
Esi_0075_0112	Esi_0003_0098	D7G6K8	D7FVX7	UvrD-like helicase C-terminal domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.714
Esi_0075_0112	Esi_0320_0009	D7G6K8	D7FX85	UvrD-like helicase C-terminal domain-containing protein.	Excinuclease ABC subunit C.	0.653
Esi_0075_0112	Esi_0516_0003	D7G6K8	D8LNZ2	UvrD-like helicase C-terminal domain-containing protein.	Exonuclease domain-containing protein.	0.660
Esi_0075_0112	PCNA	D7G6K8	D8LPF8	UvrD-like helicase C-terminal domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.714