STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BBta_0331Evidence: Similar to previously reported genes of unknown function. (178 aa)    
Predicted Functional Partners:
BBta_4777
Putative D-alanyl-D-alanine carboxypeptidase (Peptidase S11)(DD-carboxypeptidase); Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the peptidase S11 family.
 
  
 0.590
BBta_5173
Putative beta lactamase family protein; Putative D-alanyl-D-alanine carboxypeptidase; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
    
 0.507
acsA
Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.
   
   0.470
BBta_7577
Uncharacterized protein; Evidence: Similar to previously reported genes of unknown function.
 
  
 0.466
BBta_0330
Putative methyl-accepting chemotaxis receptor/sensory transducer; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 11 : Membrane.
       0.464
BBta_0332
Hypothetical protein; Evidence: No homology to any previously reported sequences.
       0.459
BBta_6865
Hypothetical protein; Evidence: Similar to previously reported genes of unknown function.
 
     0.420
BBta_6864
Evidence: Similar to previously reported genes of unknown function.
 
  
 0.410
Your Current Organism:
Bradyrhizobium sp. BTAi1
NCBI taxonomy Id: 288000
Other names: B. sp. BTAi1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.