STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BBta_0556Putative HlyD family Secretion protein; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (308 aa)    
Predicted Functional Partners:
BBta_0557
Putative multidrug efflux transporter,AcrB/AcrD/AcrF family; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 11 : Membrane; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.959
macB
Putative macrolide ABC transporter, fusion of ATP-binding and membrane domains; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.860
BBta_4107
Putative multidrug efflux transporter,AcrB/AcrD/AcrF family; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 11 : Membrane; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.816
BBta_0555
Hypothetical protein; OmpA-like transmembrane domain; Evidence: Similar to previously reported genes of unknown function.
 
 
 
 0.604
BBta_0554
Putative Peptidase, Caspase-like domain and TPR repeats; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
   0.562
BBta_5199
Putative permease of ABC transporter; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 11 : Membrane.
  
 
 0.537
BBta_7266
Putative outer membrane cobalt-zinc-cadmium resistance protein czcC precursor; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 8 : Outer membrane-associated; PUBMED: 7766206.
 
 
 0.526
BBta_7183
Putative outer membrane protein precursor CzcC; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; PUBMED: 7766206.
 
 
 0.518
BBta_3453
Putative tolC outer membrane protein; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
 0.499
BBta_3004
Putative outer TolC membrane protein; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
 0.494
Your Current Organism:
Bradyrhizobium sp. BTAi1
NCBI taxonomy Id: 288000
Other names: B. sp. BTAi1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.