STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BBta_0809HlyD family secretion protein domain; Evidence: Similar to previously reported genes of unknown function; Localization: 7 : Outer membrane protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (360 aa)    
Predicted Functional Partners:
BBta_0808
Putative component of multidrug efflux system (RND family); Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 5 : Inner membrane protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.962
macB
Putative macrolide ABC transporter, fusion of ATP-binding and membrane domains; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.860
BBta_1425
Putative component of multidrug efflux system (RND family); Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 5 : Inner membrane protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.840
BBta_2039
Putative component of multidrug efflux system (RND family); Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 5 : Inner membrane protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.840
BBta_2215
RND efflux transporter; Evidence: Function of strongly homologous gene; Localization: 5 : Inner membrane protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.838
BBta_0810
Transcriptional regulator domain; Evidence: Similar to previously reported genes of unknown function; Localization: 2 : Cytoplasmic.
     
 0.777
BBta_6003
Putative component of multidrug efflux pump, acrB/acrD/acrF family; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 5 : Inner membrane protein.
 
 
 0.660
BBta_6934
Putative component of multidrug efflux pump, acrB/acrD/acrF family; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 5 : Inner membrane protein.
 
 
 0.653
BBta_1618
Putative component of multidrug efflux pump, acrB/acrD/acrF family; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 5 : Inner membrane protein.
 
 
 0.646
BBta_5199
Putative permease of ABC transporter; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 11 : Membrane.
 
 
 0.627
Your Current Organism:
Bradyrhizobium sp. BTAi1
NCBI taxonomy Id: 288000
Other names: B. sp. BTAi1
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