STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BBta_1965Hypothetical protein; Von Willebrand factor type A domain; Evidence: Similar to previously reported genes of unknown function. (769 aa)    
Predicted Functional Partners:
BBta_1966
Putative cbbQ/nirQ/norQ/gpvN family protein; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.982
norC
Nitric oxide reductase, NorC subunit apoprotein; Evidence: Function of homologous gene experimentally demonstrated in an other organism; Localization: 6 : Inner membrane-associated.
 
  
 0.940
norB
Nitric oxide reductase, NorB subunit apoprotein; Evidence: Function of homologous gene experimentally demonstrated in an other organism; Localization: 5 : Inner membrane protein; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.939
norQ
NorD protein required for nitric oxide reductase (Nor) activity (putative Chaperone, ATPase); Evidence: Function of homologous gene experimentally demonstrated in an other organism.
 
  
 0.927
nosR
Nitrous oxide reductase regulatory protein NosR; Evidence: Function of strongly homologous gene; Localization: 11 : Membrane; PUBMED: 1644760.
  
  
 0.817
nosL
Nitrous oxide reductase accessory protein NosL (required for nitrous oxide reduction); Evidence: Similar to previously reported genes of unknown function; PUBMED: 9274035.
  
  
 0.677
nosD
Copper ABC transporter, periplasmic binding protein NosD; Evidence: Function of strongly homologous gene; Localization: 9 : Periplasmic; PUBMED: 2170125.
   
    0.665
nosZ
Nitrous oxide reductase apoprotein; Nitrous-oxide reductase is part of a bacterial respiratory system which is activated under anaerobic conditions in the presence of nitrate or nitrous oxide; In the C-terminal section; belongs to the cytochrome c oxidase subunit 2 family.
  
    0.657
cobS
Cobaltochelatase CobS subunit; Evidence: Function of homologous gene experimentally demonstrated in an other organism; Localization: 2 : Cytoplasmic.
  
  
 0.652
BBta_3359
Evidence: Similar to previously reported genes of unknown function.
  
  
 0.639
Your Current Organism:
Bradyrhizobium sp. BTAi1
NCBI taxonomy Id: 288000
Other names: B. sp. BTAi1
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