STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BBta_1985Putative hydroxyacid dehydrogenase/reductase; Putative 3-hydroxyisobutyrate dehydrogenase; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 2 : Cytoplasmic. (298 aa)    
Predicted Functional Partners:
BBta_3578
Methylmalonate-semialdehyde dehydrogenase (acylating; Evidence: Function of strongly homologous gene; Localization: 2 : Cytoplasmic.
 
 
 0.926
BBta_1722
Aminotransferase; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.902
BBta_7631
Aminotransferase; Evidence: Function of strongly homologous gene; Localization: 2 : Cytoplasmic; PUBMED: 1618757; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.902
gabT
4-aminobutyrate aminotransferase apoenzyme; Localization: 2 : Cytoplasmic; Evidence: Function of homologous gene experimentally demonstrated in an other organism; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
  0.900
pcaC
4-carboxymuconolactone decarboxylase; Evidence: Function of homologous gene experimentally demonstrated in an other organism; Localization: 2 : Cytoplasmic.
 
  
 0.892
BBta_4902
Biotin carboxylase / biotin carboxyl carrier protein; Alpha chain; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 2 : Cytoplasmic.
  
 
 0.844
acsA
Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 
 0.820
BBta_0943
propionyl-CoA synthetase; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 2 : Cytoplasmic.
  
 
 0.820
BBta_3582
Putative acetyl-CoA synthetase; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 2 : Cytoplasmic.
  
 
 0.820
BBta_6789
Acetyl-coenzyme A synthetase; Evidence: Function of strongly homologous gene; Localization: 2 : Cytoplasmic.
  
 
 0.820
Your Current Organism:
Bradyrhizobium sp. BTAi1
NCBI taxonomy Id: 288000
Other names: B. sp. BTAi1
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