STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hoxATwo component, sigma54 specific, transcriptional regulator, Fis family; Evidence: Function of homologous gene experimentally demonstrated in an other organism; Localization: 2 : Cytoplasmic. (485 aa)    
Predicted Functional Partners:
BBta_2013
PAS/PAC sensor signal transduction histidine kinase; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 2 : Cytoplasmic.
 
 
 0.993
BBta_0458
Two-component response regulator protein; Putative HupR-like transcriptional regulation of hydrogenase genes; Evidence: Function of strongly homologous gene.
  
  
 
0.912
hupJ
Hydrogenase expression/formation; Evidence: Function of strongly homologous gene; Localization: 2 : Cytoplasmic.
 
   
 0.810
hupK
Hydrogenase expression/formation; Evidence: Function of strongly homologous gene; Localization: 2 : Cytoplasmic.
 
   
 0.799
hypD-2
Hydrogenase expression/formation; Evidence: Function of homologous gene experimentally demonstrated in an other organism; Localization: 2 : Cytoplasmic; Belongs to the HypD family.
  
  
 0.796
hypE-2
Hydrogenase maturation; Evidence: Function of homologous gene experimentally demonstrated in an other organism; Localization: 2 : Cytoplasmic.
  
    0.790
hupG
Hydrogenase expression/formation; Evidence: Function of homologous gene experimentally demonstrated in an other organism; Localization: 2 : Cytoplasmic; Belongs to the HupG/HyaE family.
 
  
 0.789
hypC
Hydrogenase expression/formation; Evidence: Function of homologous gene experimentally demonstrated in an other organism; Localization: 2 : Cytoplasmic.
  
   0.785
BBta_6022
Putative two-component hybrid sensor histidine kinase and response regulator; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 
 0.785
hupI
Rubredoxin; Evidence: Function of homologous gene experimentally demonstrated in an other organism; Localization: 2 : Cytoplasmic; Belongs to the rubredoxin family.
 
   
 0.781
Your Current Organism:
Bradyrhizobium sp. BTAi1
NCBI taxonomy Id: 288000
Other names: B. sp. BTAi1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.