Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BBta_2016Hypothetical protein; Evidence: Similar to previously reported genes of unknown function. (151 aa)    
Predicted Functional Partners:
BBta_2301
Cytochrome b/c1; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.771
BBta_2514
Copper resistance protein CopC; Fragment; Evidence: Function of strongly homologous gene; Localization: 9 : Periplasmic.
  
  
 0.676
BBta_5431
Putative Copper resistance protein, copC family; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 9 : Periplasmic.
  
  
 0.676
BBta_5608
Putative exported protein of unknown function with nuclear export factor GLE1 domain; Evidence: Similar to previously reported genes of unknown function.
 
     0.656
BBta_2300
Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
   
 
 0.626
BBta_3936
Hypothetical protein; Rieske iron-sulfur domain; fragment of the domain; Evidence: Similar to previously reported genes of unknown function.
   
 
 0.626
BBta_2018
Putative exported protein of unknown function with cytochrome c domain; Evidence: Similar to previously reported genes of unknown function.
  
 
 0.582
BBta_0787
Putative electron transport protein; SCO1/SenC/PrrC-like; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 10 : Secreted.
 
   
 0.581
cyoA
Cytochrome bo3 quinol oxidase subunit 2; Evidence: Function of homologous gene experimentally demonstrated in an other organism; Localization: 5 : Inner membrane protein.
  
 
 0.561
cyoA-2
Cytochrome bb3 quinol oxidase subunit 2; Evidence: Function of homologous gene experimentally demonstrated in an other organism; Localization: 5 : Inner membrane protein.
  
 
 0.561
Your Current Organism:
Bradyrhizobium sp. BTAi1
NCBI taxonomy Id: 288000
Other names: B. sp. BTAi1
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