STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BBta_3003Hypothetical protein; Evidence: Similar to previously reported genes of unknown function; Localization: 2 : Cytoplasmic. (320 aa)    
Predicted Functional Partners:
ligJ
4-oxalomesaconate hydratase; Evidence: Function of homologous gene experimentally demonstrated in an other organism; Localization: 2 : Cytoplasmic.
 
   
 0.793
ligA
Protocatechuate 4,5-dioxygenase alpha subunit; Evidence: Function of homologous gene experimentally demonstrated in an other organism; Localization: 2 : Cytoplasmic.
 
   
 0.785
ligK
4-carboxy-4-hydroxy-2-oxoadipate aldolase; Evidence: Function of homologous gene experimentally demonstrated in an other organism; Localization: 2 : Cytoplasmic.
 
   
 0.781
ligB-2
Protocatechuate 4,5-dioxygenase beta subunit; Evidence: Function of homologous gene experimentally demonstrated in an other organism; Localization: 2 : Cytoplasmic.
 
   
 0.763
BBta_2733
Protocatechuate 4,5-dioxygenase alpha subunit; Evidence: Function of strongly homologous gene.
 
   
 0.756
mhpB
Protocatechuate 4,5-dioxygenase beta subunit; Evidence: Function of strongly homologous gene; Localization: 2 : Cytoplasmic.
 
   
 0.753
ligC
4-carboxy-2-hydroxymuconate semialdehyde dehydrogenase; Evidence: Function of homologous gene experimentally demonstrated in an other organism; Localization: 2 : Cytoplasmic.
 
   
 0.734
ligB
Protocatechuate 4,5-dioxygenase alpha subunit / protocatechuate 4,5-dioxygenase beta subunit; Evidence: Function of homologous gene experimentally demonstrated in an other organism.
 
   
 0.722
BBta_2699
Putative dehydrogenase, with NAD binding domain; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 2 : Cytoplasmic.
 
     0.716
BBta_3004
Putative outer TolC membrane protein; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.491
Your Current Organism:
Bradyrhizobium sp. BTAi1
NCBI taxonomy Id: 288000
Other names: B. sp. BTAi1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.