STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BBta_4248Hypothetical protein; Evidence: Similar to previously reported genes of unknown function. (93 aa)    
Predicted Functional Partners:
BBta_6105
Hypothetical protein; Evidence: Similar to previously reported genes of unknown function.
  
   
 0.792
recO
DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.718
BBta_0947
Hypothetical protein; Evidence: Similar to previously reported genes of unknown function.
  
   
 0.717
atpF
ATP synthase subunit B, membrane-bound, F0 sector; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
   
 0.687
BBta_0222
Putative Glutathione S-transferase family protein; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.669
BBta_0090
DNA helicase/exodeoxyribonuclease V, subunit A; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 2 : Cytoplasmic; Belongs to the helicase family. UvrD subfamily.
  
     0.666
BBta_0089
DNA helicase/exodeoxyribonuclease V, subunit B; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 2 : Cytoplasmic.
  
     0.657
lysS
lysyl-tRNA synthetase; Evidence: Function of strongly homologous gene; Localization: 2 : Cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
     0.642
BBta_0072
Hypothetical protein; Evidence: Similar to previously reported genes of unknown function.
  
     0.623
BBta_3833
DNA polymerase III, chi subunit; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 2 : Cytoplasmic.
  
     0.618
Your Current Organism:
Bradyrhizobium sp. BTAi1
NCBI taxonomy Id: 288000
Other names: B. sp. BTAi1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.