STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BBta_4260Putative hydroxybenzoate transporter; Membrane potein; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 11 : Membrane. (461 aa)    
Predicted Functional Partners:
BBta_4261
Hypothetical protein; Metal-dependent hydrolase; Evidence: Similar to previously reported genes of unknown function.
       0.631
BBta_4262
Hypothetical protein; Metal-dependent hydrolase domain; Evidence: Similar to previously reported genes of unknown function.
       0.631
BBta_4263
Hypothetical protein; Rieske domain; Evidence: Similar to previously reported genes of unknown function.
       0.631
glcA
Glycolate permease (LctP family); Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
  
   
 0.569
BBta_4264
Hypothetical protein; Evidence: No homology to any previously reported sequences.
       0.566
BBta_4259
Transcriptional regulator, LysR family; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the LysR transcriptional regulatory family.
     
 0.491
BBta_4265
Hypothetical protein; Evidence: Similar to previously reported genes of unknown function.
       0.448
citA
Citrate-proton symporter; Evidence: Function of strongly homologous gene; Localization: 5 : Inner membrane protein.
  
   
 0.433
BBta_5586
Putative Permease of the major facilitator superfamily; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 5 : Inner membrane protein.
  
  
 0.415
Your Current Organism:
Bradyrhizobium sp. BTAi1
NCBI taxonomy Id: 288000
Other names: B. sp. BTAi1
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