Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| BBta_3457 | aroC | BBta_3457 | BBta_2470 | Aminotransferase; (HisC-like); Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.751 |
| BBta_3457 | hisC | BBta_3457 | BBta_1183 | Aminotransferase; (HisC-like); Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. | Histidinol phosphate aminotransferase apoenzyme; Evidence: Function of homologous gene experimentally demonstrated in an other organism; Localization: 2 : Cytoplasmic; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. | 0.925 |
| BBta_3457 | trpA | BBta_3457 | BBta_0096 | Aminotransferase; (HisC-like); Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. | Tryptophan synthase, alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.760 |
| BBta_3457 | trpB | BBta_3457 | BBta_0097 | Aminotransferase; (HisC-like); Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. | Tryptophan synthase, beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | 0.611 |
| BBta_3457 | trpC | BBta_3457 | BBta_4483 | Aminotransferase; (HisC-like); Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. | Indole-3-glycerol phosphate synthase; Evidence: Function of homologous gene experimentally demonstrated in an other organism; Localization: 2 : Cytoplasmic; Belongs to the TrpC family. | 0.457 |
| BBta_3457 | trpD | BBta_3457 | BBta_4482 | Aminotransferase; (HisC-like); Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. | Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA). | 0.731 |
| BBta_3457 | trpE(G) | BBta_3457 | BBta_2309 | Aminotransferase; (HisC-like); Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. | Anthranilate synthase, component I; Glutamine amidotransferase; Evidence: Function of homologous gene experimentally demonstrated in an other organism; Localization: 2 : Cytoplasmic. | 0.651 |
| BBta_3457 | trpF | BBta_3457 | BBta_0098 | Aminotransferase; (HisC-like); Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. | Phosphoribosylanthranilate isomerase; Evidence: Function of homologous gene experimentally demonstrated in an other organism; Localization: 2 : Cytoplasmic; Belongs to the TrpF family. | 0.411 |
| BBta_4481 | moaC | BBta_4481 | BBta_4484 | Putative Peptidylprolyl isomerase; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. | GTP cyclohydrolase subunit MoaC; Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP); Belongs to the MoaC family. | 0.750 |
| BBta_4481 | trpC | BBta_4481 | BBta_4483 | Putative Peptidylprolyl isomerase; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. | Indole-3-glycerol phosphate synthase; Evidence: Function of homologous gene experimentally demonstrated in an other organism; Localization: 2 : Cytoplasmic; Belongs to the TrpC family. | 0.756 |
| BBta_4481 | trpD | BBta_4481 | BBta_4482 | Putative Peptidylprolyl isomerase; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. | Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA). | 0.778 |
| aroC | BBta_3457 | BBta_2470 | BBta_3457 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Aminotransferase; (HisC-like); Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. | 0.751 |
| aroC | hisC | BBta_2470 | BBta_1183 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Histidinol phosphate aminotransferase apoenzyme; Evidence: Function of homologous gene experimentally demonstrated in an other organism; Localization: 2 : Cytoplasmic; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. | 0.763 |
| aroC | trpA | BBta_2470 | BBta_0096 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Tryptophan synthase, alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.901 |
| aroC | trpB | BBta_2470 | BBta_0097 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Tryptophan synthase, beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | 0.797 |
| aroC | trpC | BBta_2470 | BBta_4483 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Indole-3-glycerol phosphate synthase; Evidence: Function of homologous gene experimentally demonstrated in an other organism; Localization: 2 : Cytoplasmic; Belongs to the TrpC family. | 0.664 |
| aroC | trpD | BBta_2470 | BBta_4482 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA). | 0.736 |
| aroC | trpE(G) | BBta_2470 | BBta_2309 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Anthranilate synthase, component I; Glutamine amidotransferase; Evidence: Function of homologous gene experimentally demonstrated in an other organism; Localization: 2 : Cytoplasmic. | 0.977 |
| aroC | trpF | BBta_2470 | BBta_0098 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Phosphoribosylanthranilate isomerase; Evidence: Function of homologous gene experimentally demonstrated in an other organism; Localization: 2 : Cytoplasmic; Belongs to the TrpF family. | 0.555 |
| hisC | BBta_3457 | BBta_1183 | BBta_3457 | Histidinol phosphate aminotransferase apoenzyme; Evidence: Function of homologous gene experimentally demonstrated in an other organism; Localization: 2 : Cytoplasmic; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. | Aminotransferase; (HisC-like); Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. | 0.925 |
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