STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BBta_4875Putative HTH-type transcriptional regulator (with cupin domain); Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (214 aa)    
Predicted Functional Partners:
BBta_4876
Hypothetical protein; Evidence: No homology to any previously reported sequences.
       0.773
BBta_4874
Hypothetical protein; Evidence: No homology to any previously reported sequences.
       0.508
BBta_4873
Hypothetical protein; Evidence: No homology to any previously reported sequences.
       0.489
BBta_4877
Putative ABC transporter, substrate binding protein; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 9 : Periplasmic.
       0.450
BBta_1444
Hypothetical protein; Evidence: Similar to previously reported genes of unknown function.
  
 
 0.437
BBta_7391
HipA-like protein domain; Evidence: Similar to previously reported genes of unknown function.
  
 
 0.437
Your Current Organism:
Bradyrhizobium sp. BTAi1
NCBI taxonomy Id: 288000
Other names: B. sp. BTAi1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.