STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BBta_5006Putative thiolase/acetyl-CoA acetyltransferase; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (382 aa)    
Predicted Functional Partners:
BBta_0817
fadJ/fadB-like; 3-hydroxyacyl-CoA dehydrogenase; enoyl-CoA hydratase/epimerase/isomerase; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.995
pimF
3-hydroxyacyl-CoA dehydrogenase; Evidence: Function of homologous gene experimentally demonstrated in an other organism; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.984
BBta_5005
Hypothetical protein; Evidence: Similar to previously reported genes of unknown function.
 
 
 0.980
BBta_7293
Phosphate butyryltransferase; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 2 : Cytoplasmic.
  
 0.948
hmgL
hydroxymethylglutaryl-CoA lyase; Localization: 2 : Cytoplasmic; Evidence: Function of strongly homologous gene.
  
 
 0.926
glcB
Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
   
 
 0.925
nifV
Homocitrate synthase; Evidence: Function of strongly homologous gene; Localization: 2 : Cytoplasmic; Belongs to the alpha-IPM synthase/homocitrate synthase family.
  
 
 0.924
BBta_2932
Hypothetical protein; Evidence: Similar to previously reported genes of unknown function.
 
 0.921
BBta_5096
Hypothetical protein; Evidence: Similar to previously reported genes of unknown function.
 
 
 0.918
BBta_3051
Putative Succinyl-CoA/coenzyme A transferase; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 
 0.913
Your Current Organism:
Bradyrhizobium sp. BTAi1
NCBI taxonomy Id: 288000
Other names: B. sp. BTAi1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.