STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BBta_5662Hypothetical protein; TPR repeat domain; Evidence: Similar to previously reported genes of unknown function. (704 aa)    
Predicted Functional Partners:
BBta_5661
Hypothetical protein; Glycosyl transferase, group 2 domain; Evidence: Similar to previously reported genes of unknown function.
   
 
 0.783
htpG
Chaperone protein htpG; Molecular chaperone. Has ATPase activity.
  
 0.649
BBta_5660
Putative O-antigen/LPS export system ATP-binding protein; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Localization: 2 : Cytoplasmic.
   
 
 0.649
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.609
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.567
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.553
BBta_2170
Putative thiosulfate sulfurtransferase; Rhodanese-like domain/ankyrin repeat domain protein; Evidence: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 0.549
BBta_1343
WD-40 repeat-containing protein; Evidence: Similar to previously reported genes of unknown function.
   
 0.545
BBta_3020
Evidence: Similar to previously reported genes of unknown function.
   
 0.545
BBta_4307
Evidence: Similar to previously reported genes of unknown function.
  
 0.541
Your Current Organism:
Bradyrhizobium sp. BTAi1
NCBI taxonomy Id: 288000
Other names: B. sp. BTAi1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.