STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AL038_00690Uncharacterized protein. (216 aa)    
Predicted Functional Partners:
MshL
Pilus (MSHA type) biogenesis protein MshL; Belongs to the bacterial secretin family.
 
    0.793
AL038_05140
Uncharacterized protein.
 
     0.786
AL038_05135
Uncharacterized protein.
 
     0.785
AL038_17030
Histidine kinase domain-containing protein.
  
     0.762
AL038_03740
Secretion system protein.
  
    0.652
AL038_00680
Uncharacterized protein.
       0.603
AL038_00685
Uncharacterized protein.
       0.603
AL038_16540
Secretion system protein E.
  
   0.589
AL038_00665
Radical SAM protein.
       0.584
AL038_00670
Glycosyl transferase.
       0.584
Your Current Organism:
Beggiatoa leptomitoformis
NCBI taxonomy Id: 288004
Other names: B. leptomitoformis, Beggiatoa leptomitiformis, Beggiatoa leptomitoformis Dubinina et al. 2017, Beggiatoa sp. D-402, DSM 14946, UNIQEM U 779, strain D-402
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.