STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AL038_00825Uncharacterized protein. (765 aa)    
Predicted Functional Partners:
AL038_12715
NACHT domain-containing protein.
  
     0.686
AL038_08425
NACHT domain-containing protein.
  
     0.643
AL038_02905
Carrier domain-containing protein.
  
     0.597
AL038_00820
Uncharacterized protein.
       0.596
AL038_12155
Uncharacterized protein.
  
     0.576
AL038_02890
Uncharacterized protein.
  
     0.567
AL038_17495
Uncharacterized protein.
  
     0.555
AL038_17500
Uncharacterized protein.
  
     0.527
AL038_17855
TPR_REGION domain-containing protein.
  
     0.519
AL038_17735
AAA_16 domain-containing protein.
  
     0.507
Your Current Organism:
Beggiatoa leptomitoformis
NCBI taxonomy Id: 288004
Other names: B. leptomitoformis, Beggiatoa leptomitiformis, Beggiatoa leptomitoformis Dubinina et al. 2017, Beggiatoa sp. D-402, DSM 14946, UNIQEM U 779, strain D-402
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.